Accession
MI0018148
Description
Brachypodium distachyon
bdi-MIR5177 precursor miRNA
Sequence
445
reads,
6.0
reads per million, 21 experiments
guccacuuuugagccacgaacguuaaaaucgUCUGAGUUGCACCCGAACUAUgaaaacugccuguuuuucaacuccaugugguuuuaaacaaguggguuugacugacaacgaugccguguauaugcuguaucacuaccauaacacuggcaugacaucaaacagaucagucucuucacuggaugcgcaugguucggguuaaaaccaugcuaaacucucacuacucauccuguuccucauugcccccucuguccucucucauuucugguauguuugacggugggccagagauguggcaaaccacuaugucagacgaaaccauuugugaaaccaucUGAGGUUGUAAAACAGACAGUucugacaguuaagagguugcaacucagacgguuuggggguucaggguugaaaguuug
....((((((((.((..((((.((.((((((((((((((((((((.((((.(.(.(((((.(((((((.(((((.((.((((((((..((((((((..(((.((((((...(((((((((.((((..(((....))))))))))).)))))((((((.....)))..))).....((.(((((.((((((((........))))))))...............))))).))..(((...((((...(((((......(((.......)))...))))).))))..)))..((((....))))..)))))).)))..)))))))))))))))).)).))))).))))))).))))).).).))))..).)).))))))))))))))))).)).)))).)).))))))))...
....((((((((.((..((((.((.((((((((((((((((((((.((((.(.(.(((((.(((((((.(((((.((.((((((((..((((((((..(((.((((((...(((((((((.((((..(((....))))))))))).)))))((((((.....)))..))).....((.(((((.((((((((........))))))))...............))))).))..(((...((((...(((((......(((.......)))...))))).))))..)))..((((....))))..)))))).)))..)))))))))))))))).)).))))).))))))).))))).).).))))..).)).))))))))))))))))).)).)))).)).))))))))...
Structure
gucc g ac g a - - -G A g a c u c u aa gu a ------------------------------------------------------------------------------------------------------------------------------------------------------acg - a cu u
acuuuuga cc gaac uu aaaucgUCUGAGUUGCA CC C AACU U a aacug cuguuuu caacu ca gugguuuu acaagugg uug cugaca augcc gugu uaug gua c
|||||||| || |||| || ||||||||||||||||| || | |||| | | ||||| ||||||| ||||| || |||||||| |||||||| ||| |||||| ||||| |||| |||| |||
ugaaaguu gg cuug gg uuuggcagacucaacgu gg g uuga a u uUGAC GACAAAA GUUGG GU uaccaaag uguuuacc agc gacugu uacgg caca auac cau a
-guu g -a g g u a aa c g c A U A c -- aa a aucaccaaacgguguagagaccggguggcaguuuguauggucuuuacucucuccugucucccccguuacuccuuguccuacucaucacucucaaaucguaccaaaauugggcuugguacgcguaggucacuucucugacuagacaaacuacag u - -- c
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
3: 9879796-9880206 [+]
Database links
Mature bdi-miR5177-5p
| Accession | MIMAT0057013 |
| Description | Brachypodium distachyon bdi-miR5177-5p mature miRNA |
| Sequence | 32 - UCUGAGUUGCACCCGAACUAU - 52 |
| Evidence |
experimental
unknown |
Mature bdi-miR5177-3p
| Accession | MIMAT0020724 |
| Description | Brachypodium distachyon bdi-miR5177-3p mature miRNA |
| Sequence | 334 - UGAGGUUGUAAAACAGACAGU - 354 |
| Evidence | not_experimental |
References
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