Stem-loop bdi-MIR5180a

Accession

MI0018153

Description

Brachypodium distachyon bdi-MIR5180a precursor miRNA

Literature search

2 open access papers mention bdi-MIR5180a
(2 sentences)

Sequence

2320 reads, 19.0 reads per million, 21 experiments

uuagugaaaaccuauaacuacuacucccucugauccaaaaUAAGUGUCUCAGUUUUGAACUaagccuaguucaagucuaguucaAAACUGCGACACUUAUUUUGGaucagagguaguagauaacugcauaugugcuugcu
.((((...........))))(((((.((((((((((((((((((((((.(((((((((((((.((.........)).))))))))))))).)))))))))))))))))))))).)))))......(((........))).

Structure

-uuagugaaaaccuauaacua     c                      U             a  cua 
                     cuacu ccucugauccaaaaUAAGUGUC CAGUUUUGAACUa gc   g
                     ||||| |||||||||||||||||||||| ||||||||||||| ||   u
                     gauga ggagacuaGGUUUUAUUCACAG GUCAAAacuugau ug   u
ucguucguguauacgucaaua     u                      C             c  aac 

Annotation confidence Low

Genome context

3: 56704432-56704571 [+]

Mature bdi-miR5180a-5p

• Accession: MIMAT0020729
• Description: Brachypodium distachyon bdi-miR5180a-5p mature miRNA
• Sequence: 41 - UAAGUGUCUCAGUUUUGAACU - 61
• Evidence: not_experimental

Mature bdi-miR5180a-3p

• Accession: MIMAT0057016
• Description: Brachypodium distachyon bdi-miR5180a-3p mature miRNA
• Sequence: 85 - AAACUGCGACACUUAUUUUGG - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293