Stem-loop bdi-MIR5181a

Accession

MI0018154

Description

Brachypodium distachyon bdi-MIR5181a precursor miRNA

Literature search

1 open access papers mention bdi-MIR5181a
(2 sentences)

Sequence

12413 reads, 89.0 reads per million, 21 experiments

gcaugccaagcuauguuuuauguacuccuucugauccauaauAAGUGUCAGGAAUUUAGUACaaaguuacuuuguacuaaauccccggcacuuaUUAUGGAUCAGAGGGAGUAagaaaauauuaacuuuguacuaaauccc
...(((.(((..(((((((...(((((((((((((((((((((((((((.((.(((((((((((((...))))))))))))).)).)))))))))))))))))))))))))))..)))))))...))).))).........

Structure

------gca   c   -cu       aug                           A  A             u 
         ugc aag   auguuuu   uacuccuucugauccauaauAAGUGUC GG AUUUAGUACaaag  
         ||| |||   |||||||   ||||||||||||||||||||||||||| || ||||||||||||| u
         aug uuc   uauaaaa   AUGAGGGAGACUAGGUAUUauucacgg cc uaaaucauguuuc  
cccuaaauc   u   aau       -ga                           c  c             a 

Annotation confidence Low

Genome context

2: 48358975-48359115 [+]

Mature bdi-miR5181a-5p

• Accession: MIMAT0020730
• Description: Brachypodium distachyon bdi-miR5181a-5p mature miRNA
• Sequence: 43 - AAGUGUCAGGAAUUUAGUAC - 62
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5181a-3p

• Accession: MIMAT0027085
• Description: Brachypodium distachyon bdi-miR5181a-3p mature miRNA
• Sequence: 95 - UUAUGGAUCAGAGGGAGUA - 113
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443