Stem-loop bdi-MIR5183

Accession

MI0018156

Description

Brachypodium distachyon bdi-MIR5183 precursor miRNA

Literature search

1 open access papers mention bdi-MIR5183
(1 sentences)

Sequence

ccugccaggauaugguuugauaaaugcauccuccgauucuaaauuguugucgaaauauuuuauguaucuauacguuuuuuaagaauagcuacguccaUAUUUGGACAAAUUUGAGUCAagaguuuagaaucagagauaguagcaaauauauc
...((((.....))))........(((((.(((.(((((((((((.((((((((.........(((.((((.(.........).)))).)))(((((....)))))...)))))..))).))))))))))).)))...)).)))........

Structure

ccugccaggauaugguuugauaaa   -  --c   c           g   --     auauuuuauguaucuauacguuuuuuaagaauagcuac     U 
                        ugc au   cuc gauucuaaauu uug  ucgaa                                      gucca A
                        ||| ||   ||| ||||||||||| |||  |||||                                      |||||  
                        acg ug   gag cuaagauuuga aAC  AGUUU                                      CAGGU U
----------------cuauauaa   a  aua   a           g   UG     -----------------------------------AAA     U 

Annotation confidence Not enough data

Genome context

2: 46665653-46665804 [-]

Mature bdi-miR5183

• Accession: MIMAT0020732
• Description: Brachypodium distachyon bdi-miR5183 mature miRNA
• Sequence: 98 - UAUUUGGACAAAUUUGAGUCA - 118
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293