miRBase entry: mtr-MIR5204

Stem-loop mtr-MIR5204

Accession

MI0018239

Description

Medicago truncatula mtr-MIR5204 precursor miRNA

Literature search

1 open access papers mention mtr-MIR5204
(1 sentences)

Sequence

aacuuuucauguucccucaaaggcuuccaguauucggucauauaauuacuugaauGCUGGAAGGUUUUGUAGGAACuugauagcuu
......(((.(((((..(((((.((((((((((((((............)))))))))))))).)))))..))))).)))......

Structure

aacuuu   u     cu     g              ucaua 
      uca guucc  caaag cuuccaguauucgg     u
      ||| |||||  ||||| ||||||||||||||      
      agu CAAGG  GUUUU GAAGGUCGuaaguu     a
uucgau   u     AU     G              cauua

Annotation confidence Not enough data

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Genome context

chr7: 23966861-23966946 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR5204

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mtr-miR5204

Accession	MIMAT0021132
Description	Medicago truncatula mtr-miR5204 mature miRNA
Sequence	56 - GCUGGAAGGUUUUGUAGGAAC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 21571671
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
"Devers EA, Branscheid A, May P, Krajinski F"
"Plant Physiol (2011) 156:1990-2010