Stem-loop mtr-MIR5212

Accession

MI0018252

Description

Medicago truncatula mtr-MIR5212 precursor miRNA

Sequence

ugguagcaguUGGAUUUCGUAUUUCUUUGGUAggauguugggccaacaauacuaCCAAGGAAAUAGAUAUCCAGCcgcuacuguc
.((((((.(((((((.((.((((((((((((((..(((((...)))))...)))))))))))))))).))))))).))))))...

Structure

--u      a       U  G              -ga     g 
   gguagc guUGGAU UC UAUUUCUUUGGUAg   uguug  
   |||||| ||||||| || ||||||||||||||   ||||| g
   ucaucg CGACCUA AG AUAAAGGAACCauc   acaac  
cug      c       U  -              aua     c 

Annotation confidence Not enough data

Genome context

chr2: 11616948-11617032 [-]

Mature mtr-miR5212-5p

• Accession: MIMAT0021145
• Description: Medicago truncatula mtr-miR5212-5p mature miRNA
• Sequence: 11 - UGGAUUUCGUAUUUCUUUGGUA - 32
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR5212-3p

• Accession: MIMAT0027100
• Description: Medicago truncatula mtr-miR5212-3p mature miRNA
• Sequence: 55 - CCAAGGAAAUAGAUAUCCAGC - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105