Dead hairpin entry

Stem-loop mtr-MIR2590h

Accession

MI0018435

Description

Medicago truncatula mtr-MIR2590h precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention mtr-MIR2590h
(1 sentences)

Sequence

34761 reads, 315.0 reads per million, 111 experiments

aaauuuuaAGAAUGACAUGGCAGAAUAAUCACccuuaaauuuuaucaagaaauagucaugaaauuaauguuaaccaauaaaaucucagccuugcugaaaaucauagggugguggguguuauguauuuuuuuuuuaugaaagauuaauAAAUGAGACUGAAAUCUAAAGGUgauuauuguaccaugucauucuugaaucuu
....((((((((((((((((.(.((((((((((.(((.(((((.(((.((.....)).)))...........(((.........(((((...))))).........)))....(((.((((.((((..(((((....)))))..)))).)))).)))))))).))).)))))))))).).))))))))))))))))....

Structure

aaau                C G          c   a     aucaagaaauagucaugaaauuaauguuaaccaauaaaaucucagccuugcugaaaaucauaggguggug   g    g    uu     u 
    uuuaAGAAUGACAUGG A AAUAAUCACc uua auuuu                                                                      ggu uuau uauu  uuuuu a
    |||||||||||||||| | |||||||||| ||| |||||                                                                      ||| |||| ||||  |||||  
    aaguucuuacuguacc u uuauuagUGG AAU UAAAG                                                                      UCA AGUA Auaa  agaaa u
uucu                a g          A   C     ----------------------------------------------------------------------   G    A    uu     g