Stem-loop sly-MIR5302a

Accession

MI0018479

Description

Solanum lycopersicum sly-MIR5302a precursor miRNA

Literature search

3 open access papers mention sly-MIR5302a
(4 sentences)

Sequence

7430 reads, 390.0 reads per million, 78 experiments

aagcauuuucagcaaaaUGAAAUGCUAUAGUUGGAAAGUucuaaacauuucggaugauaguuccaaaguaacaaaucucguuugaaugucucuugaucaacuuuuauauauauauauauauauauauauccAAACGAGGUUUGUUACUUUGGaauaucuuucgaaaucugaaaaacuuuucaacuauagcauuauuuuuugcggaaaauuuguuu
((((((((((.((((((...((((((((((((((((((((......((((((((.((((.((((((((((((((((((((((((...(((....))).......((((((((((....))))))))))..)))))))))))))))))))))))))))).))))))))......))))))))))))))))))))...)))))).)))))..)))))

Structure

     --     a      UGA                    cuaaac        u    g                        aaugucucuugaucaacuuu          u 
aagca  uuuuc gcaaaa   AAUGCUAUAGUUGGAAAGUu      auuucgga gaua uuccaaaguaacaaaucucguuug                    uauauauaua a
|||||  ||||| ||||||   ||||||||||||||||||||      |||||||| |||| ||||||||||||||||||||||||                    ||||||||||  
uuugu  aaaag cguuuu   uuacgauaucaacuuuucaa      uaaagcuu cuau aaGGUUUCAUUGUUUGGAGCAAAc                    auauauauau u
     uu     g      uua                    aaaguc        u    -                        ------------------cu          a 

Annotation confidence Low

Genome context

Unknown

Mature sly-miR5302a-5p

• Accession: MIMAT0055728
• Description: Solanum lycopersicum sly-miR5302a-5p mature miRNA
• Sequence: 18 - UGAAAUGCUAUAGUUGGAAAGU - 39
• Evidence: experimental ; unknown

Mature sly-miR5302a-3p

• Accession: MIMAT0020766
• Description: Solanum lycopersicum sly-miR5302a-3p mature miRNA
• Sequence: 132 - AAACGAGGUUUGUUACUUUGG - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21443685
   Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
   "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
   "Plant J (2011) 67:232-246