Stem-loop sly-MIR5303

Accession

MI0018480

Description

Solanum lycopersicum sly-MIR5303 precursor miRNA

Literature search

4 open access papers mention sly-MIR5303
(6 sentences)

Sequence

3082 reads, 99.0 reads per million, 76 experiments

guuGCUCGGACUCUCCAAAAAUGUUGccaaacccgugucugauccuucaaaaauacauuauuuuuguaggacaccuauggaccUUUUUGAAGAGUUCGAGCAAC
((((((((((((((.((((((.((........(((((..((.((((.((((((((...)))))))).))))))..))))))).)))))).))))))))))))))

Structure

              C      U  UGccaaac     uc  a    u        c 
guuGCUCGGACUCU CAAAAA GU        ccgug  ug uccu caaaaaua  
|||||||||||||| |||||| ||        |||||  || |||| |||||||| a
CAACGAGCUUGAGA GUUUUU ca        gguau  ac agga guuuuuau  
              A      c  --------     cc  -    u        u 

Annotation confidence Low

Genome context

chr4: 11973314-11973417 [+]

Mature sly-miR5303-5p

• Accession: MIMAT0055729
• Description: Solanum lycopersicum sly-miR5303-5p mature miRNA
• Sequence: 4 - GCUCGGACUCUCCAAAAAUGUUG - 26
• Evidence: experimental ; unknown

Mature sly-miR5303-3p

• Accession: MIMAT0020767
• Description: Solanum lycopersicum sly-miR5303-3p mature miRNA
• Sequence: 84 - UUUUUGAAGAGUUCGAGCAAC - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21443685
   Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
   "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
   "Plant J (2011) 67:232-246