Stem-loop sly-MIR5304

Accession

MI0018481

Description

Solanum lycopersicum sly-MIR5304 precursor miRNA MIR5304

Gene
family

RF03788; MIR5304

Literature search

3 open access papers mention sly-MIR5304
(3 sentences)

Sequence

6881 reads, 180.0 reads per million, 77 experiments

ucuaauuuagauccauggugcaguugcucauUCAAUGCUACAUACUCAUCCCcacaacuuucaucucacguucaaaagaugaaaguuauagaGAUGAGUAUGGUGCAUUGGAUguguggccauaccaugggugauguuaga
((((((....((((((((((..(((((.((((((((((..((((((((((.(...(((((((((((..........)))))))))))...).))))))))))..)))))))))).)))))..))))))))))...))))))

Structure

      uuag          ca     u          UA          C cac           cacg 
ucuaau    auccauggug  guugc cauUCAAUGC  CAUACUCAUC C   aacuuucaucu    u
||||||    ||||||||||  ||||| ||||||||||  |||||||||| |   |||||||||||     
agauug    uggguaccau  cggug gUAGGUUACG  GUAUGAGUAG g   uugaaaguaga    u
      -uag          ac     u          UG          a aua           aaac 

Annotation confidence Medium

Genome context

chr1: 97204436-97204576 [+]

Mature sly-miR5304-5p

• Accession: MIMAT0020768
• Description: Solanum lycopersicum sly-miR5304-5p mature miRNA
• Sequence: 32 - UCAAUGCUACAUACUCAUCCC - 52
• Evidence: experimental ; Illumina [1]

Mature sly-miR5304-3p

• Accession: MIMAT0055730
• Description: Solanum lycopersicum sly-miR5304-3p mature miRNA
• Sequence: 93 - GAUGAGUAUGGUGCAUUGGAU - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 21443685
   Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
   "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
   "Plant J (2011) 67:232-246