Stem-loop sly-MIR482a

Accession

MI0018482

Description

Solanum lycopersicum sly-MIR482a precursor miRNA

Literature search

24 open access papers mention sly-MIR482a
(258 sentences)

Sequence

723586 reads, 7326.0 reads per million, 79 experiments

cgaaaaucuaugGGGAUUGGUGAGUUGGAAAGCuuuucuuuuucuucucuugugauuagcUUUCCAAUUCCACCCAUUCCUAugguuuuucg
((((((.((((((((((.((((((((((((((((..((...............))..)))))))))))).)))).)))))))))).))))))

Structure

      u          U    -            uu  uuuuuc 
cgaaaa cuaugGGGAU GGUG AGUUGGAAAGCu  uc      u
|||||| |||||||||| |||| ||||||||||||  ||      u
gcuuuu gguAUCCUUA CCAC UUAACCUUUcga  ag      c
      u          C    C            uu  uguucu 

Annotation confidence High

Genome context

chr3: 64766256-64766347 [+]

Mature sly-miR482a-5p

• Accession: MIMAT0055731
• Description: Solanum lycopersicum sly-miR482a-5p mature miRNA
• Sequence: 13 - GGGAUUGGUGAGUUGGAAAGC - 33
• Evidence: experimental ; unknown

Mature sly-miR482a-3p

• Accession: MIMAT0020769
• Description: Solanum lycopersicum sly-miR482a-3p mature miRNA
• Sequence: 61 - UUUCCAAUUCCACCCAUUCCUA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21443685
   Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
   "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
   "Plant J (2011) 67:232-246


2. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795