Stem-loop osa-MIR5337a

Accession

MI0018519

Description

Oryza sativa osa-MIR5337a precursor miRNA

Literature search

3 open access papers mention osa-MIR5337a
(4 sentences)

Sequence

9 reads, 12 reads per million, 1 experiments

ccuucauuucAAAUUACUUGUCGUUCUAGCUuuguccuuaaacauguauaucuuugaccaucaauuuuuaaaaacucauaugguuuaacaucauaugauuuuuuuuuagauucacugacaaauacuuuaauaaauacaacucauauuuugaacuauacggauuucuaaaaauugauggucaaagauauacaugcuugacuuaggacaaagcuagaacaaaaaguauuugaguacuaga
.((....(((((((.((((...(((((((((((((((((((.((((((((((((((((((((((((((((.(((.((.((((((((((....((((((......((((......................))))......)))))).)))))))))).)).))).)))))))))))))))))))))))))))).)))....))))))))))))))))...)))))))))))....)).

Structure

c  ucau       U    GUC                ----   a                            a   c  a          cauc      uuuuuu    gauucacuga 
 cu    uucAAAU ACUU   GUUCUAGCUuuguccu    uaa cauguauaucuuugaccaucaauuuuua aaa uc uaugguuuaa    auauga      uuua          c
 ||    ||||||| ||||   ||||||||||||||||    ||| |||||||||||||||||||||||||||| ||| || ||||||||||    ||||||      ||||           
 ga    gaguuua ugaa   caagaucgaaacagga    guu guacauauagaaacugguaguuaaaaau uuu gg auaucaaguu    uauacu      aaau          a
a  ucau       -    aaa                uuca   c                            c   a  c          ---u      caacau    aauuucauaa 

Annotation confidence Not enough data

Genome context

Chr4: 5621964-5622201 [+]

Mature osa-miR5337a

• Accession: MIMAT0021410
• Description: Oryza sativa osa-miR5337a mature miRNA
• Sequence: 11 - AAAUUACUUGUCGUUCUAGCU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954