Stem-loop osa-MIR5337a

Accession

MI0018519

Description

Oryza sativa osa-MIR5337a precursor miRNA

Literature search

3 open access papers mention osa-MIR5337a
(4 sentences)

Sequence

8318 reads, 36.0 reads per million, 131 experiments

ccuucauuucAAAUUACUUGUCGUUCUAGCUUUGuccuuaaacauguauaucuuugaccaucaauuuuuaaaaacucauaugguuuaacaucauaugauuuuuuuuuagauucacugacaaauacuuuaauaaauacaacucauauuuugaacuauacggauuucuaaaaauugauggucaaagauauacaUGCUUGACUUAGGACAAAgcuagaacaaaaaguauuugaguacuaga
.((....(((((((.((((...(((((((((((((((((((.((((((((((((((((((((((((((((.(((.((.((((((((((....((((((......((((......................))))......)))))).)))))))))).)).))).)))))))))))))))))))))))))))).)))....))))))))))))))))...)))))))))))....)).

Structure

c  ucau       U    GUC                ----   a                            a   c  a          cauc      uuuuuu    gauucacuga 
 cu    uucAAAU ACUU   GUUCUAGCUUUGuccu    uaa cauguauaucuuugaccaucaauuuuua aaa uc uaugguuuaa    auauga      uuua          c
 ||    ||||||| ||||   ||||||||||||||||    ||| |||||||||||||||||||||||||||| ||| || ||||||||||    ||||||      ||||           
 ga    gaguuua ugaa   caagaucgAAACAGGA    GUU GUacauauagaaacugguaguuaaaaau uuu gg auaucaaguu    uauacu      aaau          a
a  ucau       -    aaa                UUCA   C                            c   a  c          ---u      caacau    aauuucauaa 

Annotation confidence Low

Genome context

4: 5621964-5622201 [+]

Mature osa-miR5337a-5p

• Accession: MIMAT0021410
• Description: Oryza sativa osa-miR5337a-5p mature miRNA
• Sequence: 11 - AAAUUACUUGUCGUUCUAGCUUUG - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5337a-3p

• Accession: MIMAT0056196
• Description: Oryza sativa osa-miR5337a-3p mature miRNA
• Sequence: 192 - UGCUUGACUUAGGACAAA - 209
• Evidence: experimental ; unknown

References

1. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954