Stem-loop osa-MIR5338

Accession

MI0018520

Description

Oryza sativa osa-MIR5338 precursor miRNA

Literature search

2 open access papers mention osa-MIR5338
(3 sentences)

Sequence

53629 reads, 590.0 reads per million, 63 experiments

aauuugcuucUGAAGCUUCAGUUGGUUGUAUucauuauuuucuuuagcacuauugguugauaaguucaucccUGAUGAAGUGCUAGAGAUGCUacuaauauugacuccuucaaaaaaaaagauggggcauuga
....(((((((((((..(((((((((.(((..........((((((((((((((((.(((.....))).))..)))..)))))))))))))).))))))..)))...)))))...........))))))....

Structure

aauu      -----------     -CU   --      U   Uucauuauuu           --   --  u   u 
    ugcuuc           UGAAG   UCA  GUUGGU GUA          ucuuuagcacu  auu  gg uga a
    ||||||           |||||   |||  |||||| |||          |||||||||||  |||  || ||| a
    acgggg           acuuc   agu  uaauca CGU          AGAGAUCGUGA  UAG  cc acu g
aguu      uagaaaaaaaa     cuc   ua      U   ----------           AG   Uc  u   u 

Annotation confidence Low

Genome context

5: 15185719-15185851 [-]

Mature osa-miR5338-5p

• Accession: MIMAT0021411
• Description: Oryza sativa osa-miR5338-5p mature miRNA
• Sequence: 11 - UGAAGCUUCAGUUGGUUGUAU - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5338-3p

• Accession: MIMAT0056197
• Description: Oryza sativa osa-miR5338-3p mature miRNA
• Sequence: 73 - UGAUGAAGUGCUAGAGAUGCU - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954