Stem-loop osa-MIR5339

Accession

MI0018521

Description

Oryza sativa osa-MIR5339 precursor miRNA

Sequence

36069 reads, 245.0 reads per million, 139 experiments

augcuguaaggcaucguuaaCAGAUAGAGAAUCUUCUCAGAaaauucuccaaauuugauguuugaaaucugacugauucuuugagaacugugagccuguaguuaagcuaucagcuugaaauccuuuacugcagcacuacauacuccggaaccuuguuacuguuauuagccaccagcaagccagcucaauuuacaguuagugccaccacaaaaggacucuucccaguuauauguaagcuauaccacccagauauucagcuacaccuugaaggcauaagaagcauaugcuuuuggauacaaucaaauggagaaucugaUGGGAAUAUUCUUUAUCUGUUaacaacaaacaaaggcucag
(((((....))))).(((((((((((((((((.((((((..(.((((((((..((((((.........(((((((.....(((((..(((.(((..((((((...(((..(((..((((....))))))).)))))))))..))))))...((((((..((........))..))))))....)))))....))))))).............(((....)))........((((.(((.................)))))))((..(((((((((.......))))))))))).....)))))))))))))).)..)))))).))))))))))))))))).................

Structure

--augcuguaaggcauc                 C      GA a        aa      ------------------------------------------------------------------------------------------guuugaaau       auucu     ---------------------------------aa   u   cc      uaa   au   cu    a 
                 guuaaCAGAUAGAGAAU UUCUCA  a auucucca  uuugau                                                                                                   cugacug     uugag                                   cug gag  uguagu   gcu  cag  ugaa u
                 ||||||||||||||||| ||||||  | ||||||||  ||||||                                                                                                   |||||||     |||||                                   ||| |||  ||||||   |||  |||  ||||  
                 caaUUGUCUAUUUCUUA AAGGGU  u uaagaggu  aaacua                                                                                                   gauugac     aacuc                                   ggc cuc  acauca   cga  guc  auuu c
gacucggaaacaaacaa                 U      ag c        --      acauagguuuucguauacgaagaauacggaaguuccacaucgacuuauagacccaccauaucgaauguauauugacccuucucaggaaaacaccaccgu       -auuu     gaccgaacgaccaccgauuauugucauuguuccaa   -   au      ---   -c   --    c 

Annotation confidence High

Genome context

6: 29362467-29362823 [-]

Mature osa-miR5339-5p

• Accession: MIMAT0021412
• Description: Oryza sativa osa-miR5339-5p mature miRNA
• Sequence: 21 - CAGAUAGAGAAUCUUCUCAGA - 41
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR5339-3p

• Accession: MIMAT0056198
• Description: Oryza sativa osa-miR5339-3p mature miRNA
• Sequence: 317 - UGGGAAUAUUCUUUAUCUGUU - 337
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954