Stem-loop asu-let-7

Accession

MI0018525

Description

Ascaris suum asu-let-7 precursor miRNA

Literature search

22 open access papers mention asu-let-7
(144 sentences)

Sequence

ucugcucguUGAGGUAGUAGGUUGUAUAGUUgcgagcugcauccuuucgagaaaCUGUCCAGCCUGCUAGCUUGCCgcgcggac
(((((.((.((((.((((((((((.((((((.((((.........))))...)))))).)))))))))).)))).)).))))).

Structure

-     u  u    G          U      --g    cug 
 ucugc cg UGAG UAGUAGGUUG AUAGUU   cgag   c
 ||||| || |||| |||||||||| ||||||   ||||   a
 aggcg gC GUUC AUCGUCCGAC UGUCaa   gcuu   u
c     c  C    G          C      aga    ucc 

Annotation confidence Not enough data

Genome context

gb|JH878909.1|: 2112665-2112748 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from asu-let-7

Mature asu-let-7-5p

• Accession: MIMAT0021417
• Description: Ascaris suum asu-let-7-5p mature miRNA
• Sequence: 10 - UGAGGUAGUAGGUUGUAUAGUU - 31
• Evidence: experimental ; Illumina [1]

Mature asu-let-7-3p

• Accession: MIMAT0021418
• Description: Ascaris suum asu-let-7-3p mature miRNA
• Sequence: 55 - CUGUCCAGCCUGCUAGCUUGCC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477