Stem-loop asu-mir-34

Accession

MI0018535

Description

Ascaris suum asu-mir-34 precursor miRNA

Sequence

gcggauaagucaccggcUGGCAGUGUGGUUAGCUGGUUGUcagaugugagacAACGGCUAUCACCACUGCCGUCCuggugguucguccauccg
..((((.(((((((((.((((((((((((.(((((.(((((........)))))))))))))).)))))))).)).))))))).)))).....

Structure

---gc    a       -  c        -    U     G     aga 
     ggau agucacc gg UGGCAGUG UGGU AGCUG UUGUc   u
     |||| ||||||| || |||||||| |||| ||||| |||||    
     ccug uuggugg CC GCCGUCAC ACUA UCGGC AAcag   g
gccua    c       u  U        C    -     -     agu 

Annotation confidence Low

Genome context

Unknown

Mature asu-miR-34-5p

• Accession: MIMAT0021437
• Description: Ascaris suum asu-miR-34-5p mature miRNA
• Sequence: 18 - UGGCAGUGUGGUUAGCUGGUUGU - 40
• Evidence: experimental ; Illumina [1]

Mature asu-miR-34-3p

• Accession: MIMAT0021438
• Description: Ascaris suum asu-miR-34-3p mature miRNA
• Sequence: 53 - AACGGCUAUCACCACUGCCGUCC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477