Stem-loop asu-mir-49

Accession

MI0018547

Description

Ascaris suum asu-mir-49 precursor miRNA

Sequence

ugcgcggugCGUAGUUUCAUAUGGGUAUGCUCCGuuguguauuuucgAAGCACCAUGUGAAGCUGCUAUccgaacggcga
((..(((...((((((((((((((...((((.((...........)).))))))))))))))))))...)))..))....

Structure

----  cg   ugC              GUA    C  uugu 
    ug  cgg   GUAGUUUCAUAUGG   UGCU CG    g
    ||  |||   ||||||||||||||   |||| ||    u
    gc  gcc   CGUCGAAGUGUACC   ACGA gc    a
agcg  aa   UAU              ---    A  uuuu 

Annotation confidence Low

Genome context

Unknown

Mature asu-miR-49-5p

• Accession: MIMAT0021459
• Description: Ascaris suum asu-miR-49-5p mature miRNA
• Sequence: 10 - CGUAGUUUCAUAUGGGUAUGCUCCG - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-49-3p

• Accession: MIMAT0021460
• Description: Ascaris suum asu-miR-49-3p mature miRNA
• Sequence: 48 - AAGCACCAUGUGAAGCUGCUAU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477