Stem-loop asu-mir-71

Accession

MI0018551

Description

Ascaris suum asu-mir-71 precursor miRNA

Literature search

7 open access papers mention asu-mir-71
(36 sentences)

Sequence

gggaauguggUGAAAGACAUGGGUAGUGAGACGuuacauugagucgUAUCACUAUUCUGUUUUUCGCCucguauccucg
(((((((.(((((((((((.(((((((((.(((...........))).)))))))))))))))))))).))).))))..

Structure

--    -   u           U         G   uuac 
  ggga aug ggUGAAAGACA GGGUAGUGA ACG    a
  |||| ||| ||||||||||| ||||||||| |||    u
  uccu ugc CCGCUUUUUGU CUUAUCACU Ugc    u
gc    a   u           -         A   ugag 

Annotation confidence Not enough data

Genome context

gb|JH878922.1|: 284601-284679 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from asu-mir-71

Mature asu-miR-71-5p

• Accession: MIMAT0021466
• Description: Ascaris suum asu-miR-71-5p mature miRNA
• Sequence: 11 - UGAAAGACAUGGGUAGUGAGACG - 33
• Evidence: experimental ; Illumina [1]

Mature asu-miR-71-3p

• Accession: MIMAT0021467
• Description: Ascaris suum asu-miR-71-3p mature miRNA
• Sequence: 47 - UAUCACUAUUCUGUUUUUCGCC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477