miRBase entry: asu-mir-81a

Stem-loop asu-mir-81a


Accession
MI0018555
Description
Ascaris suum asu-mir-81a precursor miRNA


Sequence


acgggcacuaggccuucacugugaaucugcagaaugccuguuauacugucUGAGAUCAUUGUGAAAGCUAUUugccuugcuug
..(((((...(((.(((((.((((.(((.((((..(.........)..))))))))))).))))).)))...)))))......

Structure
----ac     cua   c     u    a   g    au ccu 
      gggca   ggc uucac guga ucu caga  g   g
      |||||   ||| ||||| |||| ||| ||||  |   u
      uccgu   UCG AAGUG UACU AGA GUcu  c   u
guucgu     UUA   A     U    -   -    gu aua 


Annotation confidence Not enough data
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Genome context
gb|JH878925.1|: 346006-346087 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from asu-mir-81a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature asu-miR-81a-3p

Accession MIMAT0021474
Description Ascaris suum asu-miR-81a-3p mature miRNA
Sequence 51 - UGAGAUCAUUGUGAAAGCUAUU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477