Stem-loop asu-mir-100b

Accession

MI0018564

Description

Ascaris suum asu-mir-100b precursor miRNA

Literature search

1 open access papers mention asu-mir-100b
(18 sentences)

Sequence

gcucucggucAACCCGUAGAUUCGAAUUUGUGUUuacauaauggaauaaCACUGUUCGAUUCUCGGGUAGAucgaaugcu
((..((((((.(((((.(((.((((((..(((((.............))))).)))))).)))))))).))))))..)).

Structure

-  uc      A     U   U      UU     uacau 
 gc  ucgguc ACCCG AGA UCGAAU  GUGUU     a
 ||  |||||| ||||| ||| ||||||  |||||     a
 cg  agcuAG UGGGC UCU AGCUUG  CACaa     u
u  ua      A     -   U      -U     uaagg 

Annotation confidence Low

Genome context

Unknown

Mature asu-miR-100b-5p

• Accession: MIMAT0021489
• Description: Ascaris suum asu-miR-100b-5p mature miRNA
• Sequence: 11 - AACCCGUAGAUUCGAAUUUGUGUU - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-100b-3p

• Accession: MIMAT0021490
• Description: Ascaris suum asu-miR-100b-3p mature miRNA
• Sequence: 50 - CACUGUUCGAUUCUCGGGUAGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477