Stem-loop asu-mir-100c

Accession

MI0018565

Description

Ascaris suum asu-mir-100c precursor miRNA

Literature search

1 open access papers mention asu-mir-100c
(14 sentences)

Sequence

agccggugugcggugUACCCGUAGCUCCGAAAUCGUGUcagcauuugaauacACGUUUCGUUGCUCGGGUGCCcugcgcauauuuccgggguc
..(((((((((((.(((((((.(((..(((((.(((((...(....)...))))))))))..)))))))))).))))))).....))))....

Structure

--ag    -----       u       U   UC     U     cag a 
    ccgg     ugugcgg gUACCCG AGC  CGAAA CGUGU   c u
    ||||     ||||||| ||||||| |||  ||||| |||||   |  
    ggcc     acgcguc CGUGGGC UCG  GCUUU GCAca   g u
cugg    uuuau       C       -   UU     -     uaa u 

Annotation confidence Low

Genome context

Unknown

Mature asu-miR-100c-5p

• Accession: MIMAT0021491
• Description: Ascaris suum asu-miR-100c-5p mature miRNA
• Sequence: 16 - UACCCGUAGCUCCGAAAUCGUGU - 38
• Evidence: experimental ; Illumina [1]

Mature asu-miR-100c-3p

• Accession: MIMAT0021492
• Description: Ascaris suum asu-miR-100c-3p mature miRNA
• Sequence: 53 - ACGUUUCGUUGCUCGGGUGCC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477