Stem-loop asu-mir-228

Accession

MI0018571

Description

Ascaris suum asu-mir-228 precursor miRNA

Literature search

3 open access papers mention asu-mir-228
(10 sentences)

Sequence

cguacacucAAUGGCACUAGAUGAAUUCACGGuccuuuuugcuguuccgUGUAUUCACCAGUUCCAUAGAGuugcguuggc
((((.((((.((((.(((.(.(((((.(((((..(........)..))))).)))))).))).)))).)))))))).....

Structure

-----    c    A    C   A A     U     uc uuu 
     cgua acuc AUGG ACU G UGAAU CACGG  c   u
     |||| |||| |||| ||| | ||||| |||||  |    
     gcgu uGAG UACC UGA C ACUUA GUgcc  g   u
cgguu    -    A    U   C -     U     uu ucg 

Annotation confidence Not enough data

Genome context

gb|JH879370.1|: 166166-166246 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from asu-mir-228

Mature asu-miR-228-5p

• Accession: MIMAT0021503
• Description: Ascaris suum asu-miR-228-5p mature miRNA
• Sequence: 10 - AAUGGCACUAGAUGAAUUCACGG - 32
• Evidence: experimental ; Illumina [1]

Mature asu-miR-228-3p

• Accession: MIMAT0021504
• Description: Ascaris suum asu-miR-228-3p mature miRNA
• Sequence: 50 - UGUAUUCACCAGUUCCAUAGAG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477