Stem-loop asu-mir-228

Accession

MI0018571

Description

Ascaris suum asu-mir-228 precursor miRNA

Sequence

cguacacucAAUGGCACUAGAUGAAUUCACGGuccuuuuugcuguuccgUGUAUUCACCAGUUCCAUAGAGuugcguuggc
((((.((((.((((.(((.(.(((((.(((((..(........)..))))).)))))).))).)))).)))))))).....

Structure

-----    c    A    C   A A     U     uc uuu 
     cgua acuc AUGG ACU G UGAAU CACGG  c   u
     |||| |||| |||| ||| | ||||| |||||  |    
     gcgu uGAG UACC UGA C ACUUA GUgcc  g   u
cgguu    -    A    U   C -     U     uu ucg 

Annotation confidence Low

Genome context

Unknown

Mature asu-miR-228-5p

• Accession: MIMAT0021503
• Description: Ascaris suum asu-miR-228-5p mature miRNA
• Sequence: 10 - AAUGGCACUAGAUGAAUUCACGG - 32
• Evidence: experimental ; Illumina [1]

Mature asu-miR-228-3p

• Accession: MIMAT0021504
• Description: Ascaris suum asu-miR-228-3p mature miRNA
• Sequence: 50 - UGUAUUCACCAGUUCCAUAGAG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477