Stem-loop asu-mir-750

Accession

MI0018583

Description

Ascaris suum asu-mir-750 precursor miRNA

Literature search

1 open access papers mention asu-mir-750
(1 sentences)

Sequence

uggcAGUUGGAGGUUAGAUCUCGGGCAgagcauauucgguuaugCCAGAUCUAUUACUUCCAACUGAcaucgacucgu
((.((((((((((((((((((..((((.(((.......))).)))))))))))..))))))))))).)).........

Structure

---------  g           --       CG    g   au 
         ug cAGUUGGAGGU  UAGAUCU  GGCA agc  a
         || |||||||||||  |||||||  |||| |||  u
         ac GUCAACCUUCA  AUCUAGA  CCgu uug  u
ugcucagcu  A           UU       --    a   gc 

Annotation confidence Not enough data

Genome context

gb|JH878974.1|: 575074-575151 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from asu-mir-750

Mature asu-miR-750-5p

• Accession: MIMAT0021527
• Description: Ascaris suum asu-miR-750-5p mature miRNA
• Sequence: 5 - AGUUGGAGGUUAGAUCUCGGGCA - 27
• Evidence: experimental ; Illumina [1]

Mature asu-miR-750-3p

• Accession: MIMAT0021528
• Description: Ascaris suum asu-miR-750-3p mature miRNA
• Sequence: 45 - CCAGAUCUAUUACUUCCAACUGA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477