Stem-loop asu-mir-1822

Accession

MI0018587

Description

Ascaris suum asu-mir-1822 precursor miRNA

Sequence

uccuagcguaCGUCUUUCAUUCGGUUCAGCUAUCGGugaauuucgcuccGAGCUGCCCUAUGAAGGACUGUcgcuauuacg
...(((((.(((((((((((..((..(((((...(((((...)))))...)))))))..))))))))).))))))).....

Structure

--ucc     u  -         UC  UU     AUC     a 
     uagcg aC GUCUUUCAU  GG  CAGCU   GGuga  
     ||||| || |||||||||  ||  |||||   ||||| u
     aucgc UG CAGGAAGUA  CC  GUCGA   ucgcu  
gcauu     -  U         UC  --     Gcc     u 

Annotation confidence Low

Genome context

Unknown

Mature asu-miR-1822-5p

• Accession: MIMAT0021535
• Description: Ascaris suum asu-miR-1822-5p mature miRNA
• Sequence: 11 - CGUCUUUCAUUCGGUUCAGCUAUCGG - 36
• Evidence: experimental ; Illumina [1]

Mature asu-miR-1822-3p

• Accession: MIMAT0021536
• Description: Ascaris suum asu-miR-1822-3p mature miRNA
• Sequence: 50 - GAGCUGCCCUAUGAAGGACUGU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477