Stem-loop asu-mir-5346

Accession

MI0018590

Description

Ascaris suum asu-mir-5346 precursor miRNA

Sequence

ugcaguagauAGCUGGAGUUGCCCUACGACUGuguggaacgguccagUCGUUGGGAAACUCAAGCCAUcggguguugucagu
.(((.(.(((.(((.(((((.(((.(((((((.(.........)))))))).))).))))).))).))).).))).......

Structure

------u   g a   A   G     G   U       u ugg 
       gca u gau GCU GAGUU CCC ACGACUG g   a
       ||| | ||| ||| ||||| ||| ||||||| |   a
       ugu g cUA CGA CUCAA GGG UGCUgac c   c
ugacugu   g g   C   A     A   U       - ugg 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5346-5p

• Accession: MIMAT0021540
• Description: Ascaris suum asu-miR-5346-5p mature miRNA
• Sequence: 11 - AGCUGGAGUUGCCCUACGACUG - 32
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5346-3p

• Accession: MIMAT0021541
• Description: Ascaris suum asu-miR-5346-3p mature miRNA
• Sequence: 48 - UCGUUGGGAAACUCAAGCCAU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477