Stem-loop asu-mir-5349

Accession

MI0018595

Description

Ascaris suum asu-mir-5349 precursor miRNA

Sequence

ucgucuugggCUGCUCUCGGAUGAGCCAGCUUgagaauucagaaaUCUGGCACACCCGGUGGCAUUCuauccggcaauau
..(((.((((.((((.((((.((.(((((.((((....))))....))))).)).)))).)))).))))...))).....

Structure

---uc   --u    C    C    A  A     ---C    g 
     guc   uggg UGCU UCGG UG GCCAG    UUga a
     |||   |||| |||| |||| || |||||    ||||  
     cgg   auCU ACGG GGCC AC CGGUC    gacu a
uauaa   ccu    U    U    C  A     Uaaa    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5349-5p

• Accession: MIMAT0021550
• Description: Ascaris suum asu-miR-5349-5p mature miRNA
• Sequence: 11 - CUGCUCUCGGAUGAGCCAGCUU - 32
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5349-3p

• Accession: MIMAT0021551
• Description: Ascaris suum asu-miR-5349-3p mature miRNA
• Sequence: 46 - UCUGGCACACCCGGUGGCAUUC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477