Stem-loop asu-mir-5350c

Accession

MI0018598

Description

Ascaris suum asu-mir-5350c precursor miRNA

Sequence

ugauaacgcuggagguggCGUUUCUGAGGUCCGCCAAAUUgcuuuacgacaaaCUUGGCACACCUGAGAAACGCCugcuccagu
.......(((((((..(((((((((.((((..(((((.(((........)))..)))))..)))).)))))))))..)))))))

Structure

ugauaac       gu         G    CC     -A   cuu 
       gcuggag  ggCGUUUCU AGGU  GCCAA  UUg   u
       |||||||  ||||||||| ||||  |||||  |||    
       ugaccuc  CCGCAAAGA UCCA  CGGUU  aac   a
-------       gu         G    CA     Ca   agc 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5350c-5p

• Accession: MIMAT0021556
• Description: Ascaris suum asu-miR-5350c-5p mature miRNA
• Sequence: 19 - CGUUUCUGAGGUCCGCCAAAUU - 40
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5350c-3p

• Accession: MIMAT0021557
• Description: Ascaris suum asu-miR-5350c-3p mature miRNA
• Sequence: 54 - CUUGGCACACCUGAGAAACGCC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477