Stem-loop asu-mir-5356a

Accession

MI0018606

Description

Ascaris suum asu-mir-5356a precursor miRNA

Sequence

uugcacuucuucCCGCCCACGUCGUAAUUAACUGAgaguaagguucgucUGUUACUUCCGAGGUGGGAGGAAagacguaaaa
((((...((((.((.(((((.(((.((.((((.(((((.....))).)).)))).)).))).))))).)).)))).))))..

Structure

--    acu    c  G     G   U  U    U  -   u 
  uugc   ucuu CC CCCAC UCG AA UAAC GA gag a
  ||||   |||| || ||||| ||| || |||| || ||| a
  aaug   agaA GG GGGUG AGC UU AUUG cu cuu g
aa    --c    A  A     G   C  C    U  g   g 

Annotation confidence Low

Genome context

Unknown

Mature asu-miR-5356a-5p

• Accession: MIMAT0021572
• Description: Ascaris suum asu-miR-5356a-5p mature miRNA
• Sequence: 13 - CCGCCCACGUCGUAAUUAACUGA - 35
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5356a-3p

• Accession: MIMAT0021573
• Description: Ascaris suum asu-miR-5356a-3p mature miRNA
• Sequence: 50 - UGUUACUUCCGAGGUGGGAGGAA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477