Stem-loop gma-MIR5378

Accession

MI0018637

Description

Glycine max gma-MIR5378 precursor miRNA

Sequence

6997 reads, 44.0 reads per million, 173 experiments

ccuaaaauuauuuguaauauuuguguucuauccuucaaaugacuuccucaauaauaaacuUCGGACUUUGGUAUACAAAGAAaaaacuauaaaccaaauuuaugguaaaguccgaaguuaccaaauaauguuuaccauaaauuugguuuauaguuuuuucuuuguauaccaaaguccgaaauuuauuauugaggaaguCAUCUGAAGGAUAGAACACAUAuauuacaaauaauuuuagg
((((((((((((((((((((.((((((((((((((((.((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((.....................)))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))).)))))))))))))))).))))))))))))))))))))

Structure

                    u                a                    c                                                  guccgaagu 
ccuaaaauuauuuguaauau uguguucuauccuuca augacuuccucaauaauaaa uUCGGACUUUGGUAUACAAAGAAaaaacuauaaaccaaauuuaugguaaa         u
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         a
ggauuuuaauaaacauuauA ACACAAGAUAGGAAGU UACugaaggaguuauuauuu aagccugaaaccauauguuucuuuuuugauauuugguuuaaauaccauuu         c
                    U                C                    a                                                  guaauaaac 

Annotation confidence Low

Genome context

Unknown

Mature gma-miR5378-5p

• Accession: MIMAT0054233
• Description: Glycine max gma-miR5378-5p mature miRNA
• Sequence: 61 - UCGGACUUUGGUAUACAAAGAA - 82
• Evidence: experimental ; unknown

Mature gma-miR5378-3p

• Accession: MIMAT0021619
• Description: Glycine max gma-miR5378-3p mature miRNA
• Sequence: 199 - CAUCUGAAGGAUAGAACACAUA - 220
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307