Stem-loop gma-MIR5380a

Accession

MI0018639

Description

Glycine max gma-MIR5380a precursor miRNA

Sequence

10261 reads, 45.0 reads per million, 178 experiments

guaacucuuuuagaguuacuucuCAUCCUCACCAUUCAUUUUuuuaagaucuaaugguuaaaauuaguuacuuauuacaaccauuagauuuuaaGAAAAUGAAUGAUGAGGAUGGGGAguaacucuaaaaaaguuac
((((((.((((((((((((((((((((((((.(((((((((((((((((((((((((((..(((.........)))..))))))))))))))))))))))))))).)))))))))))))))))))))))).))))))

Structure

      c                        C                           aa   uag 
guaacu uuuuagaguuacuucuCAUCCUCA CAUUCAUUUUuuuaagaucuaaugguu  aau   u
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||   u
cauuga aaaaucucaaugAGGGGUAGGAGU GUAAGUAAAAGaauuuuagauuaccaa  uua   a
      a                        A                           ca   uuc 

Annotation confidence Low

Genome context

chr11: 7797520-7797656 [+]

Mature gma-miR5380a-5p

• Accession: MIMAT0054235
• Description: Glycine max gma-miR5380a-5p mature miRNA
• Sequence: 24 - CAUCCUCACCAUUCAUUUU - 42
• Evidence: experimental ; unknown

Mature gma-miR5380a-3p

• Accession: MIMAT0021621
• Description: Glycine max gma-miR5380a-3p mature miRNA
• Sequence: 95 - GAAAAUGAAUGAUGAGGAUGGGGA - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307