Stem-loop sbi-MIR5381

Accession

MI0018688

Description

Sorghum bicolor sbi-MIR5381 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5381
(1 sentences)

Sequence

gcuuuaaaccaaagcucggcgcuaagaucucuggcuccgaccucggcgccAAGAUCUGUGGCGCCGAGCucgacgccaggccacauggcgccuuggucagcgcccagauc
(((((.....)))))..((((((.((.((.........)).)).))))))..((((((.(((((.((.(..(.(((((.......))))).)..).)).)))))))))))

Structure

gcuuuaaaccaaagcucggcgcuaagaucucuggcuccgaccucggcgccAA      U     C  G uc a     gg 
                                                    GAUCUG GGCGC GA C  g cgcca  c
                                                    |||||| ||||| || |  | |||||  c
                                                    cuagac ccgcg cu g  c gcggu  a
----------------------------------------------------      -     a  g uu c     ac 

Annotation confidence Not enough data

Genome context

chr1: 562993-563102 [+]

Mature sbi-miR5381

• Accession: MIMAT0021679
• Description: Sorghum bicolor sbi-miR5381 mature miRNA
• Sequence: 51 - AAGAUCUGUGGCGCCGAGC - 69
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356