Stem-loop sbi-MIR5383

Accession

MI0018690

Description

Sorghum bicolor sbi-MIR5383 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5383
(2 sentences)

Sequence

uggaccuauuuauaggccggccAUGACAGAGCUCCGGCAGAGAUAUuuuucuccgccgagcuuaucuguggcgcuaguucacugccaucuggccgagguggucuggcaua
(((.((((....)))))))((((((...((((((.(((.((((......)))).)))))))))...))))))(((((.((((((((....)))...))))).)))))...

Structure

-------------------uggaccuauuuauaggccg      ACA      C   A    UA 
                                      gccAUG   GAGCUC GGC GAGA  U
                                      ||||||   |||||| ||| ||||   
                                      cggugu   uucgag ccg cucu  u
auacggucugguggagccggucuaccgucacuugaucg      cua      -   c    uu 

Annotation confidence Not enough data

Genome context

chr4: 43795826-43795935 [+]

Mature sbi-miR5383

• Accession: MIMAT0021681
• Description: Sorghum bicolor sbi-miR5383 mature miRNA
• Sequence: 23 - AUGACAGAGCUCCGGCAGAGAUAU - 46
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356