Stem-loop sbi-MIR5384

Accession

MI0018691

Description

Sorghum bicolor sbi-MIR5384 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5384
(1 sentences)

Sequence

ggggaaccaggaagcggcgccgccgccgggcccuuggccggugcacgcguccacccgaggguugggCGCGCCGCCGUCCAGCGGcuccgugacggcgccaaaaccggugc
.....(((.((....(((((((.(((.(((((.((((.(((((..((((((((((....)).)))))))).))))).)))).))))).))).)))))))....)))))..

Structure

gggga   a  aagc       c   c     c    c     ca        -  c 
     acc gg    ggcgccg cgc gggcc uugg cggug  cgcgucca cc g
     ||| ||    ||||||| ||| ||||| |||| |||||  |||||||| ||  
     ugg cc    ccgcggc gug cucGG GACC GCCGC  GCGCgggu gg a
---cg   -  aaaa       a   c     C    U     -C        u  g 

Annotation confidence Not enough data

Genome context

chr4: 46382362-46382471 [+]

Mature sbi-miR5384

• Accession: MIMAT0021682
• Description: Sorghum bicolor sbi-miR5384 mature miRNA
• Sequence: 67 - CGCGCCGCCGUCCAGCGG - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356