Stem-loop sbi-MIR5388

Accession

MI0018695

Description

Sorghum bicolor sbi-MIR5388 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5388
(4 sentences)

Sequence

aaaaaaaaaucuuugccgggaggguccucagcaaacauucggcaaagaaaauuugaaaaaaaauuagaaaAUCUUUGCCGGGUGUCUCUGACacagcuuccggcaaagca
..........((((((((((((.....((((.(.((((((((((((((...(((((.......)))))...)))))))))))))).))))).....))))))))))))..

Structure

aaaaaaaaau            ggucc    c a              aaa     aa 
          cuuugccgggag     ucag a acauucggcaaaga   uuuga  a
          ||||||||||||     |||| | ||||||||||||||   |||||  a
          gaaacggccuuc     AGUC U UGUGGGCCGUUUCU   agauu  a
--------ac            gacaC    - C              Aaa     aa 

Annotation confidence Not enough data

Genome context

chr8: 1576943-1577052 [+]

Mature sbi-miR5388

• Accession: MIMAT0021686
• Description: Sorghum bicolor sbi-miR5388 mature miRNA
• Sequence: 71 - AUCUUUGCCGGGUGUCUCUGAC - 92
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356