Stem-loop sbi-MIR5389

Accession

MI0018696

Description

Sorghum bicolor sbi-MIR5389 precursor miRNA

Literature search

1 open access papers mention sbi-MIR5389
(2 sentences)

Sequence

ugcagccacaaacauaugcugcaaguacuaaugcuuuguucGCUUGAGUUUAUCAGCCGAGUcugaacacuacuuuaauuucagccauggcuuaucagccaagugaacag
((((((...........))))))((((....)))).((((((((((.(((.((.(((((.(.(((((............))))).).))))).)).))))))))))))).

Structure

ugcagccacaaacauaugcugcaaguacuaaugcuu          A   U  C     A U     cacua 
                                    uguucGCUUG GUU AU AGCCG G cugaa     c
                                    |||||||||| ||| || ||||| | |||||      
                                    acaagugaac cga ua ucggu c gacuu     u
-----------------------------------g          -   c  u     a c     uaauu 

Annotation confidence Not enough data

Genome context

chr8: 4826959-4827068 [+]

Mature sbi-miR5389

• Accession: MIMAT0021687
• Description: Sorghum bicolor sbi-miR5389 mature miRNA
• Sequence: 42 - GCUUGAGUUUAUCAGCCGAGU - 62
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21740560
   Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
   Calviño M, Bruggmann R, Messing J
   BMC Genomics (2011) 12:356