Stem-loop aca-let-7b

Accession

MI0018702

Description

Anolis carolinensis aca-let-7b precursor miRNA

Literature search

1 open access papers mention aca-let-7b
(2 sentences)

Sequence

uagcucuggcaaggUGAGGUAGUAGGUUGUGUGGUuucaggguagucauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCuuga
.........(((((.(((((((((((((((((((((...((((((.....))))))..(((....))))))))))))))))))))))))))))).

Structure

uagcucugg     U                     ---------uca      u 
         caagg GAGGUAGUAGGUUGUGUGGUu            ggguag c
         ||||| |||||||||||||||||||||            |||||| a
         guuCC UUCCGUCAUCCAACAUAUCaa            cccguu u
--------a     -                     uagaggacuaac      u 

Annotation confidence Low

Genome context

chr5: 83532327-83532421 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7b

Mature aca-let-7b-5p

• Accession: MIMAT0021694
• Description: Anolis carolinensis aca-let-7b-5p mature miRNA
• Sequence: 15 - UGAGGUAGUAGGUUGUGUGGU - 35
• Evidence: experimental ; Illumina [1]

Mature aca-let-7b-3p

• Accession: MIMAT0021695
• Description: Anolis carolinensis aca-let-7b-3p mature miRNA
• Sequence: 71 - CUAUACAACCUACUGCCUUCC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107