Stem-loop aca-let-7d

Accession

MI0018705

Description

Anolis carolinensis aca-let-7d precursor miRNA

Literature search

1 open access papers mention aca-let-7d
(1 sentences)

Sequence

8817 reads, 3042.0 reads per million, 2 experiments

gugggcuccuaggaAGAGGUAGUAGGUUGCAUAGUUUuagggcagugguuuugcccaaaaggaguuaaCUAUACAACCUGCUGCCUUUCUUagggcu
...(((.(((((((.((((((((((((((.((((((((.((((((.....)))))).)).......)))))).))))))))))))))))))))))))

Structure

gug   u       A              C      -------  a      u 
   ggc ccuagga GAGGUAGUAGGUUG AUAGUU       Uu gggcag g
   ||| ||||||| |||||||||||||| ||||||       || |||||| g
   ucg ggaUUCU UUCCGUCGUCCAAC UAUCaa       aa cccguu u
---   -       -              A      uugagga  a      u 

Annotation confidence High

Genome context

GL343225.1: 747541-747637 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-let-7d

Mature aca-let-7d-5p

• Accession: MIMAT0021699
• Description: Anolis carolinensis aca-let-7d-5p mature miRNA
• Sequence: 15 - AGAGGUAGUAGGUUGCAUAGUUU - 37
• Evidence: experimental ; Illumina [1]

Mature aca-let-7d-3p

• Accession: MIMAT0021700
• Description: Anolis carolinensis aca-let-7d-3p mature miRNA
• Sequence: 69 - CUAUACAACCUGCUGCCUUUCUU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107