Stem-loop aca-let-7d

Accession

MI0018705

Description

Anolis carolinensis aca-let-7d precursor miRNA

Literature search

1 open access papers mention aca-let-7d
(1 sentences)

Sequence

gugggcuccuaggaAGAGGUAGUAGGUUGCAUAGUuuuagggcagugguuuugcccaaaaggaguuaaCUAUACAACCUGCUGCCUUUCuuagggcu
...(((.(((((((.((((((((((((((.((((((((.((((((.....)))))).)).......)))))).))))))))))))))))))))))))

Structure

gug   u       A              C      -------  a      u 
   ggc ccuagga GAGGUAGUAGGUUG AUAGUu       uu gggcag g
   ||| ||||||| |||||||||||||| ||||||       || |||||| g
   ucg ggauuCU UUCCGUCGUCCAAC UAUCaa       aa cccguu u
---   -       -              A      uugagga  a      u 

Annotation confidence Not enough data

Genome context

GL343225.1: 747541-747637 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-let-7d

Mature aca-let-7d-5p

• Accession: MIMAT0021699
• Description: Anolis carolinensis aca-let-7d-5p mature miRNA
• Sequence: 15 - AGAGGUAGUAGGUUGCAUAGU - 35
• Evidence: experimental ; Illumina [1]

Mature aca-let-7d-3p

• Accession: MIMAT0021700
• Description: Anolis carolinensis aca-let-7d-3p mature miRNA
• Sequence: 69 - CUAUACAACCUGCUGCCUUUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107