Stem-loop aca-let-7e

Accession

MI0018706

Description

Anolis carolinensis aca-let-7e precursor miRNA

Literature search

2 open access papers mention aca-let-7e
(4 sentences)

Sequence

33854 reads, 11419.0 reads per million, 2 experiments

augcuguccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggagccuuauucucccucugagcuaaCUAUACAAUCUACUGUCUUUCcuaaggagacaguaa
.((((((((((.(((..((((((((((((((.((((((((((((.......))))......)).)))))).)))))))))))))).))).))).))))))).

Structure

a       -   g   cU              A      -  ------    cc 
 ugcuguc cuu agg  GAGGUAGUAGAUUG AUAGUU gu      ggag  u
 ||||||| ||| |||  |||||||||||||| |||||| ||      ||||  u
 augacag gga ucC  UUCUGUCAUCUAAC UAUCaa cg      ccuc  a
a       a   a   -U              A      u  agucuc    uu 

Annotation confidence High

Genome context

chr4: 123683599-123683700 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7e

Mature aca-let-7e-5p

• Accession: MIMAT0021701
• Description: Anolis carolinensis aca-let-7e-5p mature miRNA
• Sequence: 17 - UGAGGUAGUAGAUUGAAUAGUU - 38
• Evidence: experimental ; Illumina [1]

Mature aca-let-7e-3p

• Accession: MIMAT0021702
• Description: Anolis carolinensis aca-let-7e-3p mature miRNA
• Sequence: 67 - CUAUACAAUCUACUGUCUUUC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107