Stem-loop aca-let-7f-1

Accession

MI0018707

Description

Anolis carolinensis aca-let-7f-1 precursor miRNA

Literature search

1 open access papers mention aca-let-7f-1
(1 sentences)

Sequence

uccugggaUGAGGUAGUAGAUUGUAUAGUUuuagggucauacccggucuuggagauaaCUAUACAAUCUACUGUCUUUccuaug
...(((((.(((((((((((((((((((((...((((...)))).((((...))))))))))))))))))))))))))))))..

Structure

ucc     U                     ---------uua    c 
   uggga GAGGUAGUAGAUUGUAUAGUU            gggu  
   ||||| |||||||||||||||||||||            |||| a
   auccU UUCUGUCAUCUAACAUAUCaa            ccca  
-gu     -                     uagagguucugg    u 

Annotation confidence Low

Genome context

chr1: 205026170-205026253 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7f-1

Mature aca-let-7f-5p

• Accession: MIMAT0021703
• Description: Anolis carolinensis aca-let-7f-5p mature miRNA
• Sequence: 9 - UGAGGUAGUAGAUUGUAUAGUU - 30
• Evidence: experimental ; Illumina [1]

Mature aca-let-7f-1-3p

• Accession: MIMAT0021704
• Description: Anolis carolinensis aca-let-7f-1-3p mature miRNA
• Sequence: 59 - CUAUACAAUCUACUGUCUUU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107