miRBase entry: aca-mir-1306

Stem-loop aca-mir-1306


Accession
MI0018732
Description
Anolis carolinensis aca-mir-1306 precursor miRNA


Sequence

150 reads, 52.0 reads per million, 2 experiments
uccaccACCUCCCCUGCAAACGUCCAGUgacgcagagguaaUGGACGUUGGCUCUGGUGGUGAuggaca
((((.((((.((...((.((((((((...((......))..)))))))).))...)).)))).))))..

Structure
--    c    U  CCU  A        GUg  gc 
  ucca cACC CC   GC AACGUCCA   ac  a
  |||| |||| ||   || ||||||||   ||   
  aggu GUGG GG   CG UUGCAGGU   ug  g
ac    A    U  UCU  G        -aa  ga 


Annotation confidence High
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Genome context
GL343364.1: 1070716-1070784 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-1306
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-1306-5p

Accession MIMAT0057908
Description Anolis carolinensis aca-miR-1306-5p mature miRNA
Sequence 7 - ACCUCCCCUGCAAACGUCCAGU - 28
Evidence experimental
Illumina [1]

Mature aca-miR-1306-3p

Accession MIMAT0021738
Description Anolis carolinensis aca-miR-1306-3p mature miRNA
Sequence 42 - UGGACGUUGGCUCUGGUGGUGA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107