Stem-loop aca-mir-133a-1

Accession

MI0018739

Description

Anolis carolinensis aca-mir-133a-1 precursor miRNA

Literature search

2 open access papers mention aca-mir-133a-1
(8 sentences)

Sequence

1767 reads, 624.0 reads per million, 2 experiments

gaggcccagaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUCaacuguucaauggaUUUGGUCCCCUUCAACCAGCUGUagcugugcauugauc
.........(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))....

Structure

gaggcccag     uuu    a       AA  U  A        aacug 
         aaugc   gcua AGCUGGU  AA GG ACCAAAUC     u
         |||||   |||| |||||||  || || ||||||||      
         uuacg   cgaU UCGACCA  UU CC UGGUUUag     u
-----cuag     ugu    G       AC  C  C        guaac 

Annotation confidence High

Genome context

chr4: 151864278-151864374 [+]

Mature aca-miR-133a-5p

• Accession: MIMAT0057910
• Description: Anolis carolinensis aca-miR-133a-5p mature miRNA
• Sequence: 23 - AGCUGGUAAAAUGGAACCAAAUC - 45
• Evidence: experimental ; Illumina [1]

Mature aca-miR-133a-3p

• Accession: MIMAT0021749
• Description: Anolis carolinensis aca-miR-133a-3p mature miRNA
• Sequence: 60 - UUUGGUCCCCUUCAACCAGCUGU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107