Stem-loop aca-mir-139

Accession

MI0018749

Description

Anolis carolinensis aca-mir-139 precursor miRNA

Sequence

631 reads, 223.0 reads per million, 2 experiments

cuggcuguauUCUACAGUGCAUGUGUCUCCAGUguuuuccagcgacUGGAGAUACGGCCCUGUUGGAAUaacagccag
(((((((((((((((((.((.(((((((((((((((....))).)))))))))))))).))).)))))).))))))))

Structure

        -      -   U  A            -   u 
cuggcugu auUCUA CAG GC UGUGUCUCCAGU guu u
|||||||| |||||| ||| || |||||||||||| |||  
gaccgaca UAAGGU GUC CG GCAUAGAGGUca cga c
        a      U   C  -            g   c 

Annotation confidence High

Genome context

GL343695.1: 186496-186573 [-]

Mature aca-miR-139-5p

• Accession: MIMAT0021762
• Description: Anolis carolinensis aca-miR-139-5p mature miRNA
• Sequence: 11 - UCUACAGUGCAUGUGUCUCCAGU - 33
• Evidence: experimental ; Illumina [1]

Mature aca-miR-139-3p

• Accession: MIMAT0021763
• Description: Anolis carolinensis aca-miR-139-3p mature miRNA
• Sequence: 47 - UGGAGAUACGGCCCUGUUGGAAU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107