Stem-loop aca-mir-140

Accession

MI0018751

Description

Anolis carolinensis aca-mir-140 precursor miRNA

Sequence

12003 reads, 4106.0 reads per million, 2 experiments

ccuuccucucucuguguccuucCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGAcgggaugccggggcucucugcg
.........(((.((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).)))))))))))))))).))))))).)))((.....)).

Structure

-ccuuccucu   u       -   A             A       u  c  c 
          cuc guguccu ucC GUGGUUUUACCCU UGGUAGg ua gu  
          ||| ||||||| ||| ||||||||||||| ||||||| || || a
          ggg cguaggg AGG CACCAAGAUGGGA ACCAUcu gu cg  
gcgucucucg   c       c   -             C       u  -  u 

Annotation confidence High

Genome context

GL343643.1: 205812-205916 [+]

Mature aca-miR-140-5p

• Accession: MIMAT0021765
• Description: Anolis carolinensis aca-miR-140-5p mature miRNA
• Sequence: 23 - CAGUGGUUUUACCCUAUGGUAG - 44
• Evidence: experimental ; Illumina [1]

Mature aca-miR-140-3p

• Accession: MIMAT0021766
• Description: Anolis carolinensis aca-miR-140-3p mature miRNA
• Sequence: 62 - UACCACAGGGUAGAACCACGGA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107