Stem-loop aca-mir-142

Accession

MI0018752

Description

Anolis carolinensis aca-mir-142 precursor miRNA

Sequence

1992 reads, 691.0 reads per million, 2 experiments

ggacaguggacucaUCCAUAAAGUAGAAAGCACUACUaaacgccugugcccaagUGUAGUGUUUCCUACUUUAUGGaugaguguacugug
..((((((.(((((((((((((((((.(((((((((.....((....))......))))))))).))))))))))))))))).)))))).

Structure

gg      g                 A         -Uaaac  c 
  acagug acucaUCCAUAAAGUAG AAGCACUAC      gc u
  |||||| ||||||||||||||||| |||||||||      ||  
  ugucau ugaguaGGUAUUUCAUC UUUGUGAUG      cg g
-g      g                 C         Ugaacc  u 

Annotation confidence Medium

Genome context

GL343287.1: 1405158-1405247 [-]

Mature aca-miR-142-5p

• Accession: MIMAT0021767
• Description: Anolis carolinensis aca-miR-142-5p mature miRNA
• Sequence: 15 - UCCAUAAAGUAGAAAGCACUACU - 37
• Evidence: experimental ; Illumina [1]

Mature aca-miR-142-3p

• Accession: MIMAT0021768
• Description: Anolis carolinensis aca-miR-142-3p mature miRNA
• Sequence: 55 - UGUAGUGUUUCCUACUUUAUGG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107