Stem-loop aca-mir-146a

Accession

MI0018756

Description

Anolis carolinensis aca-mir-146a precursor miRNA

Sequence

17491 reads, 5881.0 reads per million, 2 experiments

ccuagcucUGAGAACUGAAUUCCAUAGGCUUUagaauaauugaaaCGCCCCGUGGAUUCAGUUCUACAgcuaggcagcaacuaaa
(((((((...((((((((((.((((.((((((((.....)))))..)))..))))))))))))))..)))))))...........

Structure

-----------       cUG          U    -A   --     a 
           ccuagcu   AGAACUGAAU CCAU  GGC  UUUag a
           |||||||   |||||||||| ||||  |||  ||||| u
           ggaucgA   UCUUGACUUA GGUG  CCG  aaguu a
aaaucaacgac       -CA          -    CC   Ca     a 

Annotation confidence High

Genome context

chr3: 39596502-39596586 [+]

Mature aca-miR-146a-5p

• Accession: MIMAT0021775
• Description: Anolis carolinensis aca-miR-146a-5p mature miRNA
• Sequence: 9 - UGAGAACUGAAUUCCAUAGGCUUU - 32
• Evidence: experimental ; Illumina [1]

Mature aca-miR-146a-3p

• Accession: MIMAT0021776
• Description: Anolis carolinensis aca-miR-146a-3p mature miRNA
• Sequence: 46 - CGCCCCGUGGAUUCAGUUCUACA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107