Stem-loop aca-mir-16a

Accession

MI0018770

Description

Anolis carolinensis aca-mir-16a precursor miRNA

Literature search

1 open access papers mention aca-mir-16a
(2 sentences)

Sequence

2282 reads, 801.0 reads per million, 2 experiments

uacuuguuccgcccUAGCAGCACGUAAAUAUUGGUGUaguaaagauaaucuuaacCCCAAUAUUGUUGUGCUGCUUaagcguggcagggauu
..((((((.(((...(((((((((..((((((((.(..((.((((...)))).)))))))))))..)))))))))...))).))))))....

Structure

--ua      c   ccU         UA        U Ua  a    u 
    cuuguu cgc   AGCAGCACG  AAUAUUGG G  gu aaga  
    |||||| |||   |||||||||  |||||||| |  || |||| a
    ggacgg gcg   UCGUCGUGU  UUAUAACC C  ca uucu  
uuag      u   aaU         UG        - --  a    a 

Annotation confidence High

Genome context

chr3: 13038961-13039052 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-16a

Mature aca-miR-16a-5p

• Accession: MIMAT0021799
• Description: Anolis carolinensis aca-miR-16a-5p mature miRNA
• Sequence: 15 - UAGCAGCACGUAAAUAUUGGUGU - 37
• Evidence: experimental ; Illumina [1]

Mature aca-miR-16a-3p

• Accession: MIMAT0021800
• Description: Anolis carolinensis aca-miR-16a-3p mature miRNA
• Sequence: 56 - CCCAAUAUUGUUGUGCUGCUU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107