Stem-loop aca-mir-181a-1

Accession

MI0018775

Description

Anolis carolinensis aca-mir-181a-1 precursor miRNA

Literature search

1 open access papers mention aca-mir-181a-1
(1 sentences)

Sequence

49080 reads, 16631.0 reads per million, 2 experiments

gugguugcuucagugAACAUUCAACGCUGUCGGUGAGUuugggauuaaagugaaaACCAUCGACCGUUGAUUGUACCcuccagcuaaccaucc
(((((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).))))))..

Structure

--      -   uc  u A   U      CU       A    gggau 
  gugguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
  |||||| |||  || | ||| ||||||  ||||||| ||||     a
  uaccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
cc      u   cc  C A   U      --       -    aguga 

Annotation confidence High

Genome context

GL343211.1: 717080-717172 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-181a-1

Mature aca-miR-181a-5p

• Accession: MIMAT0021809
• Description: Anolis carolinensis aca-miR-181a-5p mature miRNA
• Sequence: 16 - AACAUUCAACGCUGUCGGUGAGU - 38
• Evidence: experimental ; Illumina [1]

Mature aca-miR-181a-1-3p

• Accession: MIMAT0057911
• Description: Anolis carolinensis aca-miR-181a-1-3p mature miRNA
• Sequence: 56 - ACCAUCGACCGUUGAUUGUACC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107