Stem-loop aca-mir-181a-2

Accession

MI0018776

Description

Anolis carolinensis aca-mir-181a-2 precursor miRNA

Literature search

1 open access papers mention aca-mir-181a-2
(1 sentences)

Sequence

49276 reads, 16694.0 reads per million, 2 experiments

aggauagcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaaucgagagcaaACCAUCGACCGUUGACUGUACCUugagguuuaucacugac
(((((((((((((.(.(((.((((((..(((((((.(((((..........)))))))))))))))))).))).).)))))).))))).))...

Structure

---  -     -      u A   U      CU       A     gaau 
   ag gauag cuucag g ACA UCAACG  GUCGGUG GUuug    c
   || ||||| |||||| | ||| ||||||  ||||||| |||||     
   uc cuauu ggaguU C UGU AGUUGC  CAGCUAC CAaac    g
cag  a     u      C A   C      --       -     gaga 

Annotation confidence High

Genome context

GL343937.1: 21112-21205 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-181a-2

Mature aca-miR-181a-5p

• Accession: MIMAT0021809
• Description: Anolis carolinensis aca-miR-181a-5p mature miRNA
• Sequence: 16 - AACAUUCAACGCUGUCGGUGAGU - 38
• Evidence: experimental ; Illumina [1]

Mature aca-miR-181a-2-3p

• Accession: MIMAT0057912
• Description: Anolis carolinensis aca-miR-181a-2-3p mature miRNA
• Sequence: 55 - ACCAUCGACCGUUGACUGUACCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107