Stem-loop aca-mir-181a-3

Accession

MI0018777

Description

Anolis carolinensis aca-mir-181a-3 precursor miRNA

Literature search

1 open access papers mention aca-mir-181a-3
(1 sentences)

Sequence

47488 reads, 16086.0 reads per million, 2 experiments

uaaaaggucuugggaAACAUUCAACGCUGUCGGUGAGUuuugucaaugaagucaaACCAUCGACUGUUGAGUGUACCcugcggcuuuuacaaa
..(((((((.((((..((((((((((..(((((((.((((.(.(......).))))))))))))))))))))))..)))).))))))).....

Structure

---ua       u    aA          CU       A    u u aa 
     aaagguc uggg  ACAUUCAACG  GUCGGUG GUuu g c  u
     ||||||| ||||  ||||||||||  ||||||| |||| | |   
     uuuucgg gucC  UGUGAGUUGU  CAGCUAC CAaa c g  g
aaaca       c    CA          --       -    - u aa 

Annotation confidence High

Genome context

chr2: 77116225-77116317 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-181a-3

Mature aca-miR-181a-5p

• Accession: MIMAT0021809
• Description: Anolis carolinensis aca-miR-181a-5p mature miRNA
• Sequence: 16 - AACAUUCAACGCUGUCGGUGAGU - 38
• Evidence: experimental ; Illumina [1]

Mature aca-miR-181a-3-3p

• Accession: MIMAT0057913
• Description: Anolis carolinensis aca-miR-181a-3-3p mature miRNA
• Sequence: 56 - ACCAUCGACUGUUGAGUGUACC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107