miRBase entry: aca-mir-193

Stem-loop aca-mir-193


Accession
MI0018788
Description
Anolis carolinensis aca-mir-193 precursor miRNA


Sequence

355 reads, 124.0 reads per million, 2 experiments
aguuuccuugggggucugggccUGGGUCUUUGCGGGCGAGAUGAgaaguuuccugccuucAACUGGCCUACAAAGUCCCAGUccucggccccugacuu
.......(((((((((.(((.(((((.(((((.((((.((.((((..((.....)).)))).)).)))).))))).))))).))).)))))))))...

Structure
aguuucc         u   c     U     C    G  A    aa  u 
       uuggggguc ggg cUGGG CUUUG GGGC AG UGAg  gu u
       ||||||||| ||| ||||| ||||| |||| || ||||  || c
       aguccccgg ucc GACCC GAAAC UCCG UC Acuu  cg c
----uuc         c   U     U     A    G  A    -c  u 


Annotation confidence High
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Genome context
GL343198.1: 1030731-1030828 [+]

Database links

Mature aca-miR-193-5p

Accession MIMAT0021826
Description Anolis carolinensis aca-miR-193-5p mature miRNA
Sequence 23 - UGGGUCUUUGCGGGCGAGAUGA - 44
Evidence experimental
Illumina [1]

Mature aca-miR-193-3p

Accession MIMAT0021827
Description Anolis carolinensis aca-miR-193-3p mature miRNA
Sequence 61 - AACUGGCCUACAAAGUCCCAGU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107